Unfortunately, not all packages available on conda are compatible with windows machines. After installing Conda, download the course Conda file and put it in your working folder. We suggest installing either Miniconda3 (NOT Anaconda).

Install Conda and download the environment file You can read more about Conda environments and other important concepts to help you make your research reproducible. Deactivate the environment after running your analyses.Two of the required software are not available as Conda packages, please see the separate instructions for installing SingleR and CHETAH. You can use in order to reproduce all your results. See and graphical example below:Ĭonda environments are a self-contained directory that This enforces reproducibility for you to run this material without the need to re-install or change your local versions. This is because conda environments allow all students to have the save computing environment, i.e. In this workshop you will use conda environments to run the exercises.

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